Search human-mouse co-expression difference here !

                  

Please cite the following paper when you use coexpressMAP. Di Liu, Linna Zhao, Yang Chen, Zhaoyang Wang, Jing Xu, Ying Li, Changgui Lei, Simeng Hu, Miaomiao Niu and Yongshuai Jiang. Comparison of the general co-expression landscapes between human and mouse. Brief Bioinform. 2017 Mar 14. doi: 10.1093/bib/bbx024. [Abstract]     [PDF]     [PubMed entry]

Search human-mouse co-expression differece using a gene pair in human. Note : the result is searched from 102681615 coexpression relationships. It may be a potentially slow. Please be patient.

and

eg1: CYP2F1  and  TNR;     eg2: MYO1F and HS6ST1

Search human-mouse co-expression differece using a gene pair in mouse.

and

eg1:Cyp2f1 and Tnr;     eg2: Myo1f  and  Hs6st1

 

Download data here !

 

Homology_human_mouse_gene information :  homology_human_mouse_gene.zip (1.22M)        Human cor-expression value (sorted) :  all_co-expression_value_human_sorted.zip (489M)        Mouse cor-expression value (sorted) : all_co-expression_value_mouse_sorted.zip (512M)        Human and mouse conserved gene :  conserved_gene_co-expression_value_human_mouse_sorted.zip  (421M)         Human general co-expression network :   human general co-expression network.zip (10.06M)        Mouse general co-expression network :   mouse general co-expression network.zip (10.42M)

 

Introduction about our Database

 

Why we construct the database ?

The murine model always serves as an important experimental system for biomedical science for it has a high degree of similarities at the sequence level with human. Here, we reviewed the comparison of the transcriptional landscapes between human and mouse However, there only about 36.54% of the co-expression relationships are conserved between the two species. So, we conduct the database helping the researcherspay attention to these differences when they carry out their study using the expression data of the human and mouse.

What data we provide ?

1. Search the co-expression data of the gene between human and mouse. 2. Download the data you need.

The percentage of the robust co-expression relationships Type Set pair Total gene-pairs Robust gene-pairs Percentage Within species H1-H2 102681615 101705904 99.05% Within species M1-M2 102681615 100738682 98.11% Between species H1-M1 102681615 38318106 37.32% Between species H1-M2 102681615 35787977 34.85% Between species H2-M1 102681615 36545838 35.59% Between species H2-M2 102681615 33909021 33.02% Between species H - M 102681615 37518602 36.54%

Data Format

We provide the mouse general co-expression data to download such as the data below.

Supplementary files