HAPLOTYPE1.0: the genome-wide haplotype association study software

brief introduction

• Download HAPLOTYPE(1.0).zip

-gwhas: carry out genome-wide haplotype association study.

-check: check the SNP markers.

-block: identify the LD block.

Other resources

• Haploview is one of the most commonly used haplotype analysis software. It supports single SNP and haplotype association tests for limited loci.
• Plink can scan the whole genome and carry out the genome-wide haplotype association study.
• Shapeit can quickly estimate the phase of haplotype.