setwd("G:/¿ÆÑÐ/methy-evo/20140911/PCA/") require(graphics) data<-read.table("gene_mean_var.txt",row.names=1,header=T) data_new<-matrix(nrow=21231,ncol=2) colnames(data_new)<-c("Mean","Var") pc.res<-princomp(data,cor=T,scores=T) pc.score<-pc.res$scores write.table(pc.score,"PCA_result.txt",row.names=T,col.names=F,quote=F,sep="\t")