Detail

RLID: RLID00001754
RNA Symbol: SEC61B
RNA Category: mRNA
Organism: Homo sapiens
Sequence:
Homology: Sec61b (Mus musculus )
Subcellular Localization:
Localization Tissue Validated Method PMID
Endoplasmic reticulum U2OS cell Fluorescence in situ hybridization 26272916
Description: Next, we monitored the localization of nesprin-2 (SYNE2) mRNA, which encodes a giant tail-anchored protein (796 kDa) that is present on the outer nuclear envelope and is involved in nuclear positioning (Luxton et al., 2010). After extraction, about two thirds of the foci remained, indicating that some of this mRNA was anchored to the ER (Fig. 1A,B). To ensure that the FISH signal was specific, we also probed cells that were depleted of the endogenous nesprin-2 mRNA using RNA interference (RNAi). Indeed, small hairpin RNA (shRNA)-treated cells lost 90% of their signal (supplementary material Fig. S1), indicating that our nesprin-2 probes detected the intended target. Like Sec61b, nesprin-2 mRNA largely remained associated with the ER in cells treated with HHT, or puromycin and EDTA. Thus nesprin-2, like Sec61b, can associate with the ER membrane, and this activity is mostly independent of translation.

Other Subcellular Localization:

RLID Localization Tissue Validated Method PMID
RLID00001753 Ribosome Colon cancer cell Next-generation sequencing 24393600
RLID00001755 Nucleus U2OS cell Fluorescence in situ hybridization 26272916
RLID00001756 Ribosome HEK293 cell Next-generation sequencing 22199352
RLID00001757 Cytosol Myeloma cell qRT-PCR 21613539