Detail

RLID: RLID00002287
RNA Symbol: Actb
RNA Category: mRNA
Organism: Mus musculus
Aliase: Actx, E430023M04Rik, beta-actin
Sequence:
Homology: ACTB (Gallus gallus), ACTB (Homo sapiens)
Network:
Subcellular Localization:
Localization Tissue Validated Method PMID
Dendrite Neuron Fluorescence in situ hybridization 18539120
Description: Fig. 1 Fluorescence in situ hybridization (FISH) of hippocampal neurons. (a-d) Neurons from wild-type (WT, right panels) or FMRP-knockout (KO, left panels) were cultured for 10 days and either not stimulated ('unstim', upper panels') or stimulated with 50uM DHPG for 15 minutes ('DHPG' lower panels). Corresponding histograms showing dendritic quantification of FISH experiments are shown to the right. Results for WT (black bars) and KO (white bars) are labeled on the x-axis. Close-up images of dendritic signals are shown to the right (in same order). (a) MAP1b mRNA (n=15-16; *p<0.001 for unstimulated vs. DHPG in WT, P>0.25 for KO). (b)CaMKIIa mRNA (n=15-17; *p<0.01 for WT, p>0.2 for KO). There was no significant difference in CaMKIIa abundance of unstimulated neurons between WT and KO (n=15, p>0.1). (c) Beta-actin mRNA (n=11-13; p>0.2). Scale bars=12um. (d-e) FISH for other mRNA targets of FMRP in both WT (right image panels) and KO (left image panels). Representative images shown for unstimulated (upper panels; 'unstim' and stimulated (lower panels; DHPG, 50uM), and close-up images of dendrites are displayed above the histograms (in same order). Histograms (right) showing dendritic fluorescence quantification are shown for WT (green) and KO (red) using probes to (d) SAPAP4 (n=16-17; p<0.01 for WT, p>25 for KO) and (e) GABA-A receptor delta (n=13-15; *, ***p<0.01 for unstimulated vs. DHPG in WT and for DHPG in WT and KO, **p<0.05 for unstimulated vs. DHPG in KO). (c) Dendritic CaMKIIa mRNA localization in response to DHPG (11DIV). (d) Dendritic SAPAP4 mRNA localization in response to DHPG (11DIV).

Other Subcellular Localization:

RLID Localization Tissue Validated Method PMID
RLID00002280 Cytoplasm Bone marrow Macrophage Next-generation sequencing 22817891
RLID00002281 Exosome Mast cell Microarray 17486113
RLID00002282 Growth cone Motoneuron In situ hybridization 14623865
RLID00002283 Endoplasmic reticulum MIN6 cell Northern blot 15972000
RLID00002284 Cytosol MIN6 cell Northern blot 15972000
RLID00002285 Dendrite Hippocampus In situ hybridization 16317045
RLID00002286 Ribosome S/S MEF cell RT-PCR 18195013
RLID00002288 Cell leading edge Fibroblast Fluorescence in situ hybridization 22832165
RLID00002289 Axon Soma qRT-PCR 24381269
RLID00002290 Cell leading edge MEF cell Florescence micrograph 26140598
RLID00002291 Perinuclear MEF cell Florescence micrograph 26140598
RLID00002292 Axon Motoneuron In situ hybridization|qRT-PCR 26464439
RLID00002293 Somatodendritic compartment Motoneuron In situ hybridization|qRT-PCR 26464439
RLID00002294 Lamellipodium Migrating cell qRT-PCR 18451862
RLID00002295 Cell leading edge Migrating cell qRT-PCR 18451862