Detail
| RLID: | RLID00011873 |
| RNA Symbol: | MALAT1 |
| RNA Category: | lncRNA |
| Organism: | Homo sapiens |
| Aliase: | HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, mascRNA |
| Subcellular Localization: | |
| Localization | Tissue | Validated Method | PMID |
| Nucleus | Hela cell | Florescence micrograph | 25630241 |
| Description: Figure 2: LncRNAs exhibit a variety of cellular localization patterns. Florescence micrographs of representative expressing cells for each of 34 lncRNAs with a validated probe set. LncRNA-cell pairs are classified to cellular localization types I to V as described in the Methods (marked by their border color). Magenta stars mark five lncRNAs that are presented in two different cell types and two different classes (see same row for comparison). Scale bar, 5 um; when a scale bar is not specified, reference the scale bar within the top left image. Top panel: fraction of each classification for each type across the full set of 70 valid lncRNA-cell pairs imaged. Data are collected from Figure 2. | |||
Other Subcellular Localization:
| RLID | Localization | Tissue | Validated Method | PMID |
| RLID00011856 | Cytosol | Myeloma cell | qRT-PCR | 21613539 |
| RLID00011857 | Cytoplasm | - | lncRNAdb | 25332394 |
| RLID00011858 | Nucleus | Fibroblast|Lymphoblast | In situ hybridization | 17270048 |
| RLID00011859 | Nucleus | HeLa cell | Northern blot | 19041754 |
| RLID00011860 | Nucleus | HeLa cell | In situ hybridization | 20797886 |
| RLID00011861 | Nucleus | Brain tissue | qRT-PCR|Microarray | 21128942 |
| RLID00011862 | Nucleus | HeLa cell | In situ hybridization | 22070123 |
| RLID00011863 | Nucleus | HeLa cell|Kidney|Lung fibroblast | In situ hybridizationq|RT-PCR | 22078878 |
| RLID00011864 | Nucleus | HeLa cell | Northern blot | 23073843 |
| RLID00011865 | Nucleus | Colon cancer cell | Next-generation sequencing | 24393600 |
| RLID00011866 | Nucleus | HeLa cell | In situ hybridization | 24569078 |
| RLID00011867 | Nucleus | Hela cell | In situ hybridization | 22855529 |
| RLID00011868 | Nucleus | - | lncRNAdb | 25332394 |
| RLID00011869 | Ribosome | - | lncRNAdb | 25332394 |
| RLID00011870 | Exosome | HeLa cell | Next-generation sequencing | 24205503 |
| RLID00011871 | Nucleus | HeLa-TO cell | Fluorescence in situ hybridization | 22355166 |
| RLID00011872 | Nucleus | HeLa cell | RT-PCR | 23152763 |