Detail

RLID: RLID00037044
RNA Symbol: Xlsirt
RNA Category: lncRNA
Organism: Xenopus laevis
Subcellular Localization:
Localization Tissue Validated Method PMID
Germ plasm Oocyte In situ hybridization 11784096
Description: The germ plasm is a specialized region of oocyte cytoplasm that contains determinants of germ cell fate. In Xenopus oocytes, the germ plasm is a part of the METRO region of mitochondrial cloud. It contains the germinal granules and a variety of coding and noncoding RNAs that include Xcat2, Xlsirts, Xdazl, DEADSouth, Xpat, Xwnt11, fatVg, B7/Fingers, C10/XFACS, and mitochondrial large and small rRNA. We analyzed the distribution of these 11 different RNAs within the various compartments of germ plasm during Xenopus oogenesis and development by using whole-mount electron microscopy in situ hybridization.

Other Subcellular Localization:

RLID Localization Tissue Validated Method PMID
RLID00037032 Mitochondrion Oocyte - 7505061
RLID00037033 Vegetal Oocyte - 7505061
RLID00037034 Mitochondrion Oocyte In situ hybridization 7539356
RLID00037035 Cytoplasm Oocyte In situ hybridization 8948579
RLID00037036 Mitochondrion Oocyte In situ hybridization 8948579
RLID00037037 Vegetal Oocyte In situ hybridization 8948579
RLID00037038 Mitochondrion Oocyte In situ hybridization 9545550
RLID00037039 Endoplasmic reticulum Oocyte In situ hybridization 9545550
RLID00037040 Vegetal Oocyte In situ hybridization 9545550
RLID00037041 Vegetal Oocyte In situ hybridization 9739112
RLID00037042 Mitochondrion Oocyte In situ hybridization 9739112
RLID00037043 Germ plasm Oocyte In situ hybridization 9739112
RLID00037045 Mitochondrion Oocyte In situ hybridization 11784096
RLID00037046 Vegetal Oocyte In situ hybridization 12676327
RLID00037047 Mitochondrion Oocyte Quantitative RNA localization assay 19223445