Meta-analysis
polymorphisms satisfied the requirements for meta-analysis, users can directly perform meta-analyses on these polymorphisms. Users can choose the parameters, such as the type of study (e.g., case-control), the assumed risk allele, and the genetic model. In addition, users can either analyze just their own data or supplement it with RADB data. Users can use any of keywords to search this table, such as rs2476601, PTPN22 C1858T, 26191, PTPN22, 1p13.3 .
| Polymorphisms | Alias | Entrez Gene ID | Gene Symbol | Chr | Startloci | Endloci | Assumed risk allele | Preparing data |
|---|---|---|---|---|---|---|---|---|
| rs2476601 | PTPN22 C1858T ,PTPN22 1858C/T ,PTPN22 R620W | 26191 | PTPN22 | 1 | 114356433 | 114414375 | T | |
| rs7574865 | STAT4 | 6775 | STAT4 | 2 | 191894302 | 192016322 | T | |
| rs1800629 | TNFA -308A/G ,TNFA -308G/A ,TNFA -308G>A ,TNFA G-308A | 7124 | TNF | 6 | 31543344 | 31546113 | A | |
| rs7528684 | FCRL3 -169T/C ,FCRL3 -169C/T ,FCRL3 -169T>C ,FCRL3 -169A/G | 115352 | FCRL3 | 1 | 157647978 | 157670647 | C | |
| rs3087456 | MHC2TA -168A/G ,MHC2TA -168G/A | 4261 | CIITA | 16 | 10971055 | 11018840 | G | |
| rs1800896 | IL-10 -1087G>A ,IL10 G-1082A ,IL10 -1082G/A ,IL10 -1082A/G ,IL-10 -1082G/A ,IL-10 -1082A/G | 3586 | IL10 | 1 | 206940948 | 206945839 | G | |
| rs16944 | IL1B -511C/T ,IL1B -511 | 3553 | IL1B | 2 | 113587337 | 113594356 | C | |
| rs396991 | FCGR3A V158F ,FCGR3A 158F/V | 2214 | FCGR3A | 1 | 161511549 | 161520413 | V | |
| rs231775 | CTLA4 49G/A ,CTLA4 +49A/G ,CTLA4 49A/G ,CTLA4 +49G/A ,CTLA4 +49A/G ,CTLA4 A49G ,CTLA4 position 49 polymorphism | 1493 | CTLA4 | 2 | 204732511 | 204738683 | G | |
| rs361525 | TNFA -238G/A | 7124 | TNF | 6 | 31543344 | 31546113 | G | |
| rs1800795 | IL6 -174G/C ,IL-6 -174C/G ,IL-6 -174G/C ,IL-6 -174G>C ,IL6 -174C/G | 3569 | IL6 | 7 | 22766766 | 22771621 | C | |
| rs1748033 | PADI4_104 ,PADI4-104 | 23569 | PADI4 | 1 | 17634690 | 17690495 | T | |
| rs2240340 | PADI4_94 ,PADI4-94 | 23569 | PADI4 | 1 | 17634690 | 17690495 | T | |
| rs1982073 | TGFB1 869T/C ,TGFB1 +869T>C ,TGFB1 T869C ,TGF-B1 869T/C | 7040 | TGFB1 | 19 | 41836812 | 41859831 | T | |
| rs7021206 | NA | 7185 | TRAF1 | 9 | 123664671 | 123691451 | A | |
| rs1801133 | MTHFR 677C/T ,MTHFR C677T | 4524 | MTHFR | 1 | 11845787 | 11866160 | T | |
| rs874881 | PADI4_92 ,padi4_92G/C ,padi4_92*G/C | 23569 | PADI4 | 1 | 17634690 | 17690495 | G | |
| rs11264799 | FCRL3 -110G/A | 115352 | FCRL3 | 1 | 157647978 | 157670647 | A | |
| rs3738919 | NA | 3685 | ITGAV | 2 | 187454790 | 187545628 | C | |
| rs33996649 | PTPN22 R263Q | 26191 | PTPN22 | 1 | 114356433 | 114414375 | G | |
| rs2243250 | IL4 -590C/T ,IL-4 -590C/T ,IL4 -524C/T | 3565 | IL4 | 5 | 132009678 | 132018370 | T | |
| rs1946518 | IL18 -607A/C ,IL-18 -607C/A ,IL-18 -607A/C | 3606 | IL18 | 11 | 112013974 | 112034840 | C | |
| rs1801131 | MTHFR 1298A/C ,MTHFR A1298C | 4524 | MTHFR | 1 | 11845787 | 11866160 | C | |
| rs10818488 | TRAF1 | 7185 | TRAF1 | 9 | 123664671 | 123691451 | G | |
| rs1061622 | TNFRSF1B 676T/G | 7133 | TNFRSF1B | 1 | 12227060 | 12269277 | G | |
| rs1801274 | FcgR2a R131H ,FCGR2A H131R ,FcGR2A 131R/H ,FCGR2A 131H/R | 2212 | FCGR2A | 1 | 161475205 | 161489360 | H | |
| rs1143634 | IL1B +3954 ,IL1B 3954 ,IL1B +3954C/T | 3553 | IL1B | 2 | 113587337 | 113594356 | A | |
| rs187238 | IL18 -137G/C ,IL-18 -137G/C | 3606 | IL18 | 11 | 112013974 | 112034840 | G | |
| rs2000811 | NA | 4155 | MBP | 18 | 74690789 | 74844774 | T | |
| rs6920220 | NA | 7128 | TNFAIP3 | 6 | 138188325 | 138204451 | A | |
| IL-10 -592A/C | 3586 | IL10 | 1 | 206940948 | 206945839 | A | ||
| rs4810485 | NA | 958 | CD40 | 20 | 44746906 | 44758384 | G | |
| rs2073838 | SLC22A4 slc2F1 ,SLC22A4 slc2-F1 ,SLC22A4 igr3044a1 ,SLC22A4/A5 slc2-F1 | 6583 | SLC22A4 | 5 | 131630145 | 131679899 | A | |
| rs3761959 | FCRL3 1381 | 115352 | FCRL3 | 1 | 157647978 | 157670647 | A | |
| rs945635 | NA | 115352 | FCRL3 | 1 | 157647978 | 157670647 | G | |
| rs11203366 | padi4_89 ,PADI4-89 ,PADI4 163G>A ,PADI4 163A/G | 23569 | PADI4 | 1 | 17634690 | 17690495 | G | |
| rs2227309 | NA | 840 | CASP7 | 10 | 115438921 | 115490668 | A | |
| rs6822844 | NA | 3558 | IL2 | 4 | 123372625 | 123377650 | G | |
| rs2004640 | NA | 3663 | IRF5 | 7 | 128577994 | 128590089 | T | |
| rs3087243 | NA | 1493 | CTLA4 | 2 | 204732511 | 204738683 | G | |
| rs3761847 | NA | 7185 | TRAF1 | 9 | 123664671 | 123691451 | A | |
| rs1143627 | IL1B -31C/T | 3553 | IL1B | 2 | 113587337 | 113594356 | A | |
| rs2010963 | VEGF -634G/C ,VEGFA -634G>C ,VEGF -634C/G | 7422 | VEGFA | 6 | 43737946 | 43754224 | C | |
| rs11203367 | padi4_90 ,PADI4-90 ,PADI4 245T>C ,PADI4 245C/T | 23569 | PADI4 | 1 | 17634690 | 17690495 | T | |
| rs5742909 | CTLA4 -318C/T ,CTLA4 -319C/T | 1493 | CTLA4 | 2 | 204732511 | 204738683 | T | |
| TNFRII 196M/R | 7133 | TNFRSF1B | 1 | 12227060 | 12269277 | R | ||
| rs2812378 | NA | 6366 | CCL21 | 9 | 34709002 | 34710147 | C | |
| rs3021097 | IL10 -819C/T ,IL-10 -819C/T ,IL-10 -819C/A | 3586 | IL10 | 1 | 206940948 | 206945839 | T | |
| rs1310182 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | T | |
| rs2268277 | RUNX1 runx1 | 861 | RUNX1 | 21 | 36160098 | 36421595 | C | |
| rs2280714 | NA | 3663 | IRF5 | 7 | 128577994 | 128590089 | T | |
| rs2488457 | PTPN22 -1123G>C | 26191 | PTPN22 | 1 | 114356433 | 114414375 | C | |
| rs3789604 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | A | |
| rs3792876 | SLC22A4 slc2F2 ,SLC22A4/A5 slc2f2 | 6583 | SLC22A4 | 5 | 131630145 | 131679899 | T | |
| rs4774 | MHC2TA +1614G/C | 4261 | CIITA | 16 | 10971055 | 11018840 | G | |
| rs4986790 | TLR4 299A/G ,TLR4 Asp299Gly ,TLR4 +896A>G ,TLR4 G299D | 7099 | TLR4 | 9 | 120466453 | 120479769 | G | |
| rs1800630 | TNFA -863C/A | 7124 | TNF | 6 | 31543344 | 31546113 | C | |
| CD14 -159C/T | 929 | CD14 | 5 | 140011313 | 140013286 | C | ||
| FCGR3B NA1/NA2 | 2215 | FCGR3B | 1 | 161592986 | 161601753 | 2 | ||
| rs11889341 | NA | 6775 | STAT4 | 2 | 191894302 | 192016322 | T | |
| rs3811021 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | T | |
| CTLA-4 CT60 | 1493 | CTLA4 | 2 | 204732511 | 204738683 | G | ||
| MCP-1 -2518G/A | 6347 | CCL2 | 17 | 32582296 | 32584222 | A | ||
| NFKBIL1 -62A/T | 4795 | NFKBIL1 | 6 | 31514628 | 31526606 | T | ||
| TAP2 379A/G | 6891 | TAP2 | 6 | 32789610 | 32806547 | A | ||
| rs1799724 | TNFA -857C/T | 7124 | TNF | 6 | 31543344 | 31546113 | T | |
| rs767455 | TNF-RI +36 ,TNFRI 36A/G | 7132 | TNFRSF1A | 12 | 6437923 | 6451283 | A | |
| rs7700944 | NA | 0 | A | |||||
| rs3746444 | NA | 0 | C | |||||
| rs2910164 | NA | 0 | G | |||||
| rs805297 | NA | 0 | T | |||||
| rs3093024 | NA | 0 | A | |||||
| rs2516049 | NA | 0 | C | |||||
| rs2240335 | NA | 23569 | PADI4 | 1 | 17634690 | 17690495 | A | |
| rs2297518 | NOS2A Ser608Leu ,NOS2a 608G/A | 4843 | NOS2 | 17 | 26083792 | 26127555 | T | |
| rs13207033 | NA | 7128 | TNFAIP3 | 6 | 138188325 | 138204451 | 2 | |
| rs1217413 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | C | |
| rs187084 | TLR9 -1486T/C ,TLR9 -1237T/C | 54106 | TLR9 | 3 | 52255096 | 52260179 | T | |
| rs1004819 | NA | 149233 | IL23R | 1 | 67632169 | 67725662 | G | |
| rs11102685 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | A | |
| rs1217414 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | C | |
| rs12730735 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | A | |
| rs12760457 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | G | |
| rs1343151 | NA | 149233 | IL23R | 1 | 67632169 | 67725662 | A | |
| rs231779 | CTLA4 +1882C/T | 1493 | CTLA4 | 2 | 204732511 | 204738683 | T | |
| rs2488458 | NA | 26191 | PTPN22 | 1 | 114356433 | 114414375 | A | |
| rs6498169 | NA | 23274 | CLEC16A | 16 | 11038345 | 11276046 | G | |
| rs7517847 | NA | 149233 | IL23R | 1 | 67632169 | 67725662 | A | |
| eNOS -786T/C | 4846 | NOS3 | 7 | 150688144 | 150711687 | T | ||
| IL-12 -1188A/C | 3592 | IL12A | 3 | 159706623 | 159713806 | C | ||
| IL-1B 3953C/T | 3553 | IL1B | 2 | 113587337 | 113594356 | T | ||
| IL-2 -330T/G | 3558 | IL2 | 4 | 123372625 | 123377650 | G | ||
| IL4RA 1902A/G | 3566 | IL4R | 16 | 27325230 | 27376099 | A | ||
| MIF -173G/C | 268 | C | ||||||
| p53 72Arg/Pro | 7157 | TP53 | 17 | 7571720 | 7590868 | Arg | ||
| rs2227981 | PDCD1 PD-1.5 C/T | 5133 | PDCD1 | 2 | 242792033 | 242801058 | G | |
| PDCD1 PD-1.1 G/A | 5133 | PDCD1 | 2 | 242792033 | 242801058 | G | ||
| rs1136410 | PARP 762T/C ,PARP-1 Val762Ala | 142 | PARP1 | 1 | 226548392 | 226595801 | C | |
| rs2282283 | NA | 115352 | FCRL3 | 1 | 157647978 | 157670647 | C | |
| rs2282284 | NA | 115352 | FCRL3 | 1 | 157647978 | 157670647 | C | |
| rs2631367 | SLC22A5*G-207C | 6584 | SLC22A5 | 5 | 131705401 | 131731306 | G | |
| rs360718 | NA | 3606 | IL18 | 11 | 112013974 | 112034840 | G | |
| rs360722 | NA | 3606 | IL18 | 11 | 112013974 | 112034840 | C | |
| rs4505848 | NA | 84162 | KIAA1109 | 4 | 123091758 | 123283914 | G | |
| TAP1 333A/G | 6890 | TAP1 | 6 | 32812986 | 32821748 | A | ||
| TAP1 637A/G | 6890 | TAP1 | 6 | 32812986 | 32821748 | G | ||
| TAP2 565A/G | 6891 | TAP2 | 6 | 32789610 | 32806547 | G | ||
| TAP2 665A/G | 6891 | TAP2 | 6 | 32789610 | 32806547 | G | ||
| VDR BsmI | 1594 | b | ||||||
| VDR TaqI | 1594 | T | ||||||
| NRAMP1 1465-85G/A | 6556 | SLC11A1 | 2 | 219246752 | 219261617 | G | ||
| NRAMP1 274C/T | 6556 | SLC11A1 | 2 | 219246752 | 219261617 | T | ||
| NRAMP1 469+14G/C | 6556 | SLC11A1 | 2 | 219246752 | 219261617 | C | ||
| NRAMP1 577-18G/A | 6556 | SLC11A1 | 2 | 219246752 | 219261617 | G | ||
| NRAMP1 823C/T | 6556 | SLC11A1 | 2 | 219246752 | 219261617 | T | ||
| rs42041 | NA | 1021 | CDK6 | 7 | 92234235 | 92465941 | C | |
| CTLA-4 exon 1 polymorphism | 1493 | CTLA4 | 2 | 204732511 | 204738683 | G | ||
| IL-1B E1/E2 | 3553 | IL1B | 2 | 113587337 | 113594356 | 1 | ||
| LTA 252A/G | 4049 | LTA | 6 | 31539876 | 31542101 | G | ||
| rs10181656 | NA | 6775 | STAT4 | 2 | 191894302 | 192016322 | G | |
| rs10499194 | NA | 7128 | TNFAIP3 | 6 | 138188325 | 138204451 | T | |
| rs1570360 | VEGF -1154G/A ,VEGFA -1154G>A | 7422 | VEGFA | 6 | 43737946 | 43754224 | G | |
| rs1801275 | IL4R Q551R ,IL-4RA Q576R | 3566 | IL4R | 16 | 27325230 | 27376099 | A | |
| rs1805010 | IL4R I50V ,IL-4RA I50V | 3566 | IL4R | 16 | 27325230 | 27376099 | G | |
| rs3218253 | NA | 3560 | IL2RB | 22 | 37521878 | 37545962 | T | |
| rs4112788 | NA | 353144 | LCE3C | 1 | 152573138 | 152573562 | C | |
| rs8179673 | NA | 6775 | STAT4 | 2 | 191894302 | 192016322 | C | |
| rs3093659 | TNFA -376G/A | 7124 | TNF | 6 | 31543344 | 31546113 | G | |
| rs9288952 | BTLA 800AT/C | 151888 | BTLA | 3 | 112182813 | 112218408 | T | |
| rs4986791 | TLR4 399C/T ,TLR4 Thr399Ile | 7099 | TLR4 | 9 | 120466453 | 120479769 | C | |
| PADI4_97 | 23569 | PADI4 | 1 | 17634690 | 17690495 | 2 | ||
| PADI4_99 | 23569 | PADI4 | 1 | 17634690 | 17690495 | 2 | ||
| PADI4_100 | 23569 | PADI4 | 1 | 17634690 | 17690495 | 2 | ||
| rs878329 | NA | 0 | C | |||||
| rs6502867 | NA | 0 | C | |||||
| rs763361 | CD226 Gly307Ser | 0 | T | |||||
| rs755622 | MIF -173G/C | 0 | G | |||||
| rs3811047 | NA | 0 | A | |||||
| rs1883832 | NA | 0 | T |
| Polymorphism : | ||
| (1) Case-control : | ||
| (2) Assumed risk allele : | ||
| (3) Genetic model : | ||
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