All polymorphisms studied in this paper [PMID: 10852383] , total : 54 polymorphisms

Title : Different gene loci within the HLA-DR and TNF regions are independently associated with susceptibility and severity in Spanish rheumatoid arthritis patients.
Abstract : The aim of this study was to investigate whether polymorphisms in the tumor necrosis factor (TNF) and HLA-DRB1 gene regions are independently associated with rheumatoid arthritis (RA) in a population from Lugo region of northwestern Spain. RA patients (n=179) attending hospital outpatient clinics in Lugo, northwestern Spain and matched controls (n=145) were recruited. RA susceptibility in this population was predominantly associated with DRB1*0401, while erosive disease was associated with HLA-DRB1*0101 and DRB1*04. The increase in DRB1*04 was accounted for by an increase in DRB1*0404 and *0405 but not *0401 frequencies. In contrast, *0401 frequency was significantly increased in seropositive patients. The rheumatoid arthritis shared epitope (SE) was associated with increased risk for seropositive and erosive disease and this appeared to operate in a dose-dependent manner. Logistic regression analyses revealed that the TNF microsatellite markers TNFc1 and b3 were associated with RA independently of DRB1*04 and the SE. Carriage of a TNF c1 allele provided an increased risk of RA in SE-negative and SE-heterozygous individuals. TNFc1 and TNFb3 were not associated with erosive or seropositive disease. In contrast, TNF a2 was significantly associated with erosive disease which was independent of DRB1*04 and the SE. Further studies will be needed to establish why (TNFc1) polymorphism seemingly associated with low TNFalpha production, is a risk factor for RA.
Author : Hajeer AH,Dababneh A,Makki RF,Thomson W,Poulton K,Gonzalez-Gay MA,Garcia-Porrua C,Mattey DL,Ollier WE,
Source : Tissue Antigens. 2000 Apr;55(4):319-25.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 NA HLA-DRB1 3123
2 NA HLA-DRB1 3123
3 NA HLA-DRB1 3123
4 NA HLA-DRB1 3123
5 NA HLA-DRB1 3123
6 NA HLA-DRB1 3123
7 NA HLA-DRB1 3123
8 NA HLA-DRB1 3123
9 NA HLA-DRB1 3123
10 NA HLA-DRB1 3123
11 NA HLA-DRB1 3123
12 NA HLA-DRB1 3123
13 NA HLA-DRB1 3123
14 NA HLA-DRB1 3123
15 NA HLA-DRB1 3123
16 NA HLA-DRB1 3123
17 NA HLA-DRB1 3123
18 NA HLA-DRB1 3123
19 NA HLA-DRB1 3123
20 NA HLA-DRB1 3123
21 NA HLA-DRB1 3123
22 NA HLA-DRB1 3123
23 NA HLA-DRB1 3123
24 NA HLA-DRB1 3123
25 NA TNF 7124
26 NA TNF 7124
27 NA TNF 7124
28 NA TNF 7124
29 NA TNF 7124
30 NA TNF 7124
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