All polymorphisms studied in this paper [PMID: 11454644] , total : 68 polymorphisms

Title : Tumour necrosis factor microsatellites and HLA-DRB1*, HLA-DQA1*, and HLA-DQB1* alleles in Peruvian patients with rheumatoid arthritis.
Abstract : OBJECTIVE: To study the association between rheumatoid arthritis (RA) and HLA and tumour necrosis factor (TNF) polymorphism in Peruvian mestizo patients in comparison with ethnically similar controls. METHODS: Seventy nine patients with RA and 65 ethnically matched healthy controls were genotyped for HLA-DRB1, HLA-DQA1, HLA-DQB1, and TNFalpha and TNFbeta alleles using PCR amplification. Clinical severity was assessed as mild, moderate, or severe in 35 of the patients. RESULTS: TNFalpha6 showed the strongest association with disease susceptibility. The TNFalpha6 allele was more common in patients than in controls (p<0.0076) and the proportion of patients with at least one copy of this allele was greater (p<0.015, relative risk 2.35). Among the HLA-DRB1* alleles with the shared epitope sequence, only the DRB1*1402 allele was significantly increased in patients compared with controls (p<0.0311), as was the proportion of patients with at least one copy of this allele (p<0.0232, relative risk 2.74). In contrast, the overall frequency of alleles with the shared epitope was not different in patients and controls. The haplotype HLA-DRB1*1402-DQB1*0301-DQA1*0401 was significantly more common in patients. TNFalpha6 was more common in patients whether or not they had this haplotype. None of the 11 patients lacking the TNFalpha6 allele had severe disease. CONCLUSIONS: This study shows for the first time that TNF gene polymorphism is associated with susceptibility to RA in a non-white population. TNFalpha6 and HLA-DRB1*1402 independently conferred significantly increased risk in Peruvian mestizo patients.
Author : Castro F,Acevedo E,Ciusani E,Angulo JA,Wollheim FA,Sandberg-Wollheim M,
Source : Ann Rheum Dis. 2001 Aug;60(8):791-5.
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No.Polymorphism nameGene SymbolEntrez Gene ID
31 NA HLA-DQA1 3117
32 NA HLA-DQA1 3117
33 NA HLA-DQA1 3117
34 NA HLA-DQA1 3117
35 NA HLA-DQA1 3117
36 NA HLA-DQB1 3119
37 NA HLA-DQB1 3119
38 NA HLA-DQB1 3119
39 NA HLA-DQB1 3119
40 NA HLA-DQB1 3119
41 NA HLA-DQB1 3119
42 NA HLA-DQB1 3119
43 NA HLA-DQB1 3119
44 NA HLA-DQB1 3119
45 NA HLA-DQB1 3119
46 NA HLA-DQB1 3119
47 NA HLA-DQB1 3119
48 NA HLA-DQB1 3119
49 NA TNF 7124
50 NA TNF 7124
51 NA TNF 7124
52 NA TNF 7124
53 NA TNF 7124
54 NA TNF 7124
55 NA TNF 7124
56 NA TNF 7124
57 NA TNF 7124
58 NA TNF 7124
59 NA TNF 7124
60 NA TNF 7124
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