All polymorphisms studied in this paper [PMID: 17804842] , total : 63 polymorphisms

Title : STAT4 and the risk of rheumatoid arthritis and systemic lupus erythematosus.
Abstract : BACKGROUND: Rheumatoid arthritis is a chronic inflammatory disease with a substantial genetic component. Susceptibility to disease has been linked with a region on chromosome 2q. METHODS: We tested single-nucleotide polymorphisms (SNPs) in and around 13 candidate genes within the previously linked chromosome 2q region for association with rheumatoid arthritis. We then performed fine mapping of the STAT1-STAT4 region in a total of 1620 case patients with established rheumatoid arthritis and 2635 controls, all from North America. Implicated SNPs were further tested in an independent case-control series of 1529 patients with early rheumatoid arthritis and 881 controls, all from Sweden, and in a total of 1039 case patients and 1248 controls from three series of patients with systemic lupus erythematosus. RESULTS: A SNP haplotype in the third intron of STAT4 was associated with susceptibility to both rheumatoid arthritis and systemic lupus erythematosus. The minor alleles of the haplotype-defining SNPs were present in 27% of chromosomes of patients with established rheumatoid arthritis, as compared with 22% of those of controls (for the SNP rs7574865, P=2.81x10(-7); odds ratio for having the risk allele in chromosomes of patients vs. those of controls, 1.32). The association was replicated in Swedish patients with recent-onset rheumatoid arthritis (P=0.02) and matched controls. The haplotype marked by rs7574865 was strongly associated with lupus, being present on 31% of chromosomes of case patients and 22% of those of controls (P=1.87x10(-9); odds ratio for having the risk allele in chromosomes of patients vs. those of controls, 1.55). Homozygosity of the risk allele, as compared with absence of the allele, was associated with a more than doubled risk for lupus and a 60% increased risk for rheumatoid arthritis. CONCLUSIONS: A haplotype of STAT4 is associated with increased risk for both rheumatoid arthritis and systemic lupus erythematosus, suggesting a shared pathway for these illnesses.
Author : Remmers EF,Plenge RM,Lee AT,Graham RR,Hom G,Behrens TW,de Bakker PI,Le JM,Lee HS,Batliwalla F,Li W,Masters SL,Booty MG,Carulli JP,Padyukov L,Alfredsson L,Klareskog L,Chen WV,Amos CI,Criswell LA,Seldin MF,Kastner DL,Gregersen PK,
Source : N Engl J Med. 2007 Sep 6;357(10):977-86.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs3088307 GLS 2744
2 rs16824035 STAT1 6772
3 rs6718902 STAT1 6772
4 rs13395505 STAT1 6772
5 rs17749316 STAT1 6772
6 rs1547550 STAT1 6772
7 rs2280234 STAT1 6772
8 rs2280233 STAT1 6772
9 rs2280232 STAT1 6772
10 rs13005843 STAT1 6772
11 rs11887698 STAT1 6772
12 rs10199181 STAT1 6772
13 rs13029532 STAT1 6772
14 rs10208033 STAT1 6772
15 rs1467199 STAT1 6772
16 rs16833177 NA NA
17 rs3024918 NA NA
18 rs3024904 STAT4 6775
19 rs3024936 STAT4 6775
20 rs925847 STAT4 6775
21 rs6749371 STAT4 6775
22 rs6715106 STAT4 6775
23 rs16833215 STAT4 6775
24 rs16833220 STAT4 6775
25 rs3024866 STAT4 6775
26 rs932169 STAT4 6775
27 rs1517352 STAT4 6775
28 rs13017460 STAT4 6775
29 rs2459611 STAT4 6775
30 rs7601754 STAT4 6775
63 records 1/3 page Next  1  2   3 
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