All polymorphisms studied in this paper [PMID: 17897462] , total : 49 polymorphisms

Title : A case-control study of rheumatoid arthritis identifies an associated single nucleotide polymorphism in the NCF4 gene, supporting a role for the NADPH-oxidase complex in autoimmunity.
Abstract : Rheumatoid arthritis (RA) is a chronic inflammatory disease with a heritability of 60%. Genetic contributions to RA are made by multiple genes, but only a few gene associations have yet been confirmed. By studying animal models, reduced capacity of the NADPH-oxidase (NOX) complex, caused by a single nucleotide polymorphism (SNP) in one of its components (the NCF1 gene), has been found to increase severity of arthritis. To our knowledge, however, no studies investigating the potential role played by reduced reactive oxygen species production in human RA have yet been reported. In order to examine the role played by the NOX complex in RA, we investigated the association of 51 SNPs in five genes of the NOX complex (CYBB, CYBA, NCF4, NCF2, and RAC2) in a Swedish case-control cohort consisting of 1,842 RA cases and 1,038 control individuals. Several SNPs were found to be mildly associated in men in NCF4 (rs729749, P = 0.001), NCF2 (rs789181, P = 0.02) and RAC2 (rs1476002, P = 0.05). No associations were detected in CYBA or CYBB. By stratifying for autoantibody status, we identified a strong association for rs729749 (in NCF4) in autoantibody negative disease, with the strongest association detected in rheumatoid factor negative men (CT genotype versus CC genotype: odds ratio 0.34, 95% confidence interval 0.2 to 0.6; P = 0.0001). To our knowledge, this is the first genetic association identified between RA and the NOX complex, and it supports previous findings from animal models of the importance of reactive oxygen species production capacity to the development of arthritis.
Author : Olsson LM,Lindqvist AK,Kallberg H,Padyukov L,Burkhardt H,Alfredsson L,Klareskog L,Holmdahl R,
Source : Arthritis Res Ther. 2007;9(5):R98.
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No.Polymorphism nameGene SymbolEntrez Gene ID
31 rs8135343 RAC2 5880
32 rs2285110 RAC2 5880
33 rs1476002 RAC2 5880
34 rs2284038 RAC2 5880
35 rs2239774 RAC2 5880
36 rs2239775 RAC2 5880
37 rs2213430 RAC2 5880
38 rs1049254 CYBA 1535
39 rs3180279 CYBA 1535
40 rs12709102 CYBA 1535
41 rs4673 CYBA 1535
42 rs4782393 CYBA 1535
43 rs3794624 CYBA 1535
44 rs4422908 CYBB 1536
45 rs5964099 CYBB 1536
46 rs4827298 CYBB 1536
47 rs5964125 CYBB 1536
48 rs5964149 CYBB 1536
49 rs5964151 CYBB 1536
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