All polymorphisms studied in this paper [PMID: 19262425] , total : 71 polymorphisms

Title : Investigation of genetic variants within candidate genes of the TNFRSF1B signalling pathway on the response to anti-TNF agents in a UK cohort of rheumatoid arthritis patients.
Abstract : The introduction of anti-tumour necrosis factor (TNF) agents has greatly improved the treatment of rheumatoid arthritis; however, a significant proportion of patients fail to respond to therapy. We hypothesized that genes within the TNF receptor superfamily member 1B signalling pathway contribute towards the observed variation in patient response. This was tested by genotyping 73 single-nucleotide polymorphisms (SNPs) from six candidate genes (DUSP1, HRB, IKBKAP, MAP3K1, MAP3K14 and TANK) in a large UK cohort of rheumatoid arthritis patients (n=642). Two SNPs [rs96844 (MAP3K1) and rs4792847 (MAP3K14)] showed evidence of association (P<0.05) to treatment response and were subsequently examined in an independent cohort of patients (n=428). Replication of association to either SNP was not achieved, but combined analysis of the complete cohort (n=1070) provided nominal evidence of association to both SNPs. We conclude that analysis of the common variation in the selected candidate genes did not provide strong evidence to implicate their involvement in varying patient response to anti-TNF treatment.
Author : Bowes JD,Potter C,Gibbons LJ,Hyrich K,Plant D,Morgan AW,Wilson AG,Isaacs JD,Worthington J,Barton A,
Source : Pharmacogenet Genomics. 2009 Apr;19(4):319-23. doi: 10.1097/FPC.0b013e328328d51f.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs96844 NA NA
2 rs4792847 MAP3K14 9020
3 rs13170779 NA NA
4 rs17658295 NA NA
5 rs2249619 NA NA
6 rs2431664 NA NA
7 rs322353 NA NA
8 rs322382 DUSP1 1843
9 rs881150 DUSP1 1843
10 rs10933188 AGFG1 3267
11 rs12466158 AGFG1 3267
12 rs12866 AGFG1 3267
13 rs13426457 AGFG1 3267
14 rs4281891 AGFG1 3267
15 rs10117384 IKBKAP 8518
16 rs10435834 IKBKAP 8518
17 rs10435835 IKBKAP 8518
18 rs2230792 IKBKAP 8518
19 rs2230791 IKBKAP 8518
20 rs10979605 IKBKAP 8518
21 rs10979613 IKBKAP 8518
22 rs11791391 IKBKAP 8518
23 rs12340246 IKBKAP 8518
24 rs12341419 IKBKAP 8518
25 rs1341216 IKBKAP 8518
26 rs1759852 IKBKAP 8518
27 rs1772043 IKBKAP 8518
28 rs2230788 IKBKAP 8518
29 rs2185330 IKBKAP 8518
30 rs2230793 IKBKAP 8518
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