All polymorphisms studied in this paper [PMID: 19262425] , total : 71 polymorphisms

Title : Investigation of genetic variants within candidate genes of the TNFRSF1B signalling pathway on the response to anti-TNF agents in a UK cohort of rheumatoid arthritis patients.
Abstract : The introduction of anti-tumour necrosis factor (TNF) agents has greatly improved the treatment of rheumatoid arthritis; however, a significant proportion of patients fail to respond to therapy. We hypothesized that genes within the TNF receptor superfamily member 1B signalling pathway contribute towards the observed variation in patient response. This was tested by genotyping 73 single-nucleotide polymorphisms (SNPs) from six candidate genes (DUSP1, HRB, IKBKAP, MAP3K1, MAP3K14 and TANK) in a large UK cohort of rheumatoid arthritis patients (n=642). Two SNPs [rs96844 (MAP3K1) and rs4792847 (MAP3K14)] showed evidence of association (P<0.05) to treatment response and were subsequently examined in an independent cohort of patients (n=428). Replication of association to either SNP was not achieved, but combined analysis of the complete cohort (n=1070) provided nominal evidence of association to both SNPs. We conclude that analysis of the common variation in the selected candidate genes did not provide strong evidence to implicate their involvement in varying patient response to anti-TNF treatment.
Author : Bowes JD,Potter C,Gibbons LJ,Hyrich K,Plant D,Morgan AW,Wilson AG,Isaacs JD,Worthington J,Barton A,
Source : Pharmacogenet Genomics. 2009 Apr;19(4):319-23. doi: 10.1097/FPC.0b013e328328d51f.
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No.Polymorphism nameGene SymbolEntrez Gene ID
31 rs2275626 IKBKAP 8518
32 rs2275635 IKBKAP 8518
33 rs2275639 IKBKAP 8518
34 rs2275640 IKBKAP 8518
35 rs2304779 IKBKAP 8518
36 rs2793328 IKBKAP 8518
37 rs3780507 IKBKAP 8518
38 rs3818875 IKBKAP 8518
39 rs4369056 IKBKAP 8518
40 rs4978374 IKBKAP 8518
41 rs4978753 IKBKAP 8518
42 rs7030308 IKBKAP 8518
43 rs7872727 ACTL7A 10881
44 rs838818 IKBKAP 8518
45 rs838827 IKBKAP 8518
46 rs12655019 NA NA
47 rs16886407 MAP3K1 4214
48 rs3822625 MAP3K1 4214
49 rs832539 NA NA
50 rs832547 MAP3K1 4214
51 rs832575 MAP3K1 4214
52 rs832581 MAP3K1 4214
53 rs860579 MAP3K1 4214
54 rs866223 MAP3K1 4214
55 rs1047833 MAP3K14 9020
56 rs1047841 MAP3K14 9020
57 rs11574837 MAP3K14 9020
58 rs16939943 MAP3K14 9020
59 rs17686001 MAP3K14 9020
60 rs2074292 MAP3K14 9020
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