All polymorphisms studied in this paper [PMID: 12509789] , total : 44 polymorphisms

Title : Identification of I kappa BL as the second major histocompatibility complex-linked susceptibility locus for rheumatoid arthritis.
Abstract : Rheumatoid arthritis (RA) is a chronic inflammatory joint disease with a complex etiology in which environmental factors within a genetically susceptible host maneuver the innate and adaptive arms of the immune system toward recognition of autoantigens. This ultimately leads to joint destruction and clinical symptomatology. Despite the identification of a number of disease-susceptibility regions across the genome, RA's major genetic linkage remains with the major histocompatibility complex (MHC), which contains not only the key immune-response class I and class II genes but also a host of other loci, some with potential immunological relevance. Inside the MHC itself, the sole consistent RA association is that with HLA-DRB1, although this does not encode all MHC-related susceptibility. Indeed, in a set of Japanese patients with RA and a control group, we previously reported the presence of a second RA-susceptibility gene within the telomeric human leukocyte antigen (HLA) class III region. Using microsatellites, we narrowed the susceptibility region to 70 kb telomeric of the TNF cluster, known to harbor four expressed genes (I kappa BL, ATP6G, BAT1, and MICB). Here, using numerous single-nucleotide polymorphisms (SNPs) and insertion/deletion polymorphisms, we identify the second RA-susceptibility locus within the HLA region, as the T allele of SNP 96452 (T/A), in the promoter region (position -62) of the I kappa BL gene (P=.0062). This -62T/A SNP disrupts the putative binding motif for the transcriptional repressor, delta EF1, and hence may influence the transcription of I kappa BL, homologous to I kappa B alpha, the latter being a known inhibitor of NF kappa B, which is central to innate immunity. Therefore, the MHC may harbor RA genetic determinants affecting the innate and adaptive arms of the immune system.
Author : Okamoto K,Makino S,Yoshikawa Y,Takaki A,Nagatsuka Y,Ota M,Tamiya G,Kimura A,Bahram S,Inoko H,
Source : Am J Hum Genet. 2003 Feb;72(2):303-12. Epub 2002 Dec 31.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs1799724 TNF 7124
2 rs1800630 TNF 7124
3 rs1799964 TNF 7124
4 rs2230365 NFKBIL1 4795
5 rs3219179 NFKBIL1 4795
6 rs2239707 NFKBIL1 4795
7 rs3093949 NFKBIL1 4795
8 rs2857604 NFKBIL1 4795
9 rs2857605 NFKBIL1 4795
10 rs3219180 NFKBIL1 4795
11 rs3219181 NFKBIL1 4795
12 rs3219182 NFKBIL1 4795
13 rs3219183 NFKBIL1 4795
14 rs2071591 NFKBIL1 4795
15 rs2239708 NFKBIL1 4795
16 rs2071592 NFKBIL1 4795
17 rs3219184 NFKBIL1 4795
18 rs3219185 NFKBIL1 4795
19 rs3219186 NA NA
20 rs2523502 NFKBIL1 4795
21 rs2523503 NFKBIL1 4795
22 rs2239705 NFKBIL1 4795
23 rs2071593 NFKBIL1 4795
24 rs2071594 NFKBIL1 4795
25 rs2239528 DDX39B 7919
26 rs2523505 DDX39B 7919
27 rs2523506 DDX39B 7920
28 rs2239527 DDX39B 7919
29 rs2071595 DDX39B 7919
30 rs3219187 DDX39B 7919
44 records 1/2 page Next  1  2 
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