All polymorphisms studied in this paper [PMID: 17195206] , total : 42 polymorphisms

Title : Genetic association between the PRKCH gene encoding protein kinase Ceta isozyme and rheumatoid arthritis in the Japanese population.
Abstract : OBJECTIVE: Analyses of families with rheumatoid arthritis (RA) have suggested the presence of a putative susceptibility locus on chromosome 14q21-23. This large population-based genetic association study was undertaken to examine this region. METHODS: A 2-stage case-control association study of 950 unrelated Japanese patients with RA and 950 healthy controls was performed using >400 gene-based common single-nucleotide polymorphisms (SNPs). RESULTS: Multiple SNPs in the PRKCH gene encoding the eta isozyme of protein kinase C (PKCeta) showed significant single-locus disease associations, the most significant being SNP c.427+8134C>T (odds ratio 0.72, 95% confidence interval 0.62-0.83, P = 5.9 x 10(-5)). Each RA-associated SNP was consistently mapped to 3 distinct regions of strong linkage disequilibrium (i.e., linkage disequilibrium or haplotype blocks) in the PRKCH gene locus, suggesting that multiple causal variants influence disease susceptibility. Significant SNPs included a novel common missense polymorphism of the PRKCH gene, V374I (rs2230500), which lies within the ATP-binding site that is highly conserved among PKC superfamily members. In circulating lymphocytes, PRKCH messenger RNA was expressed at higher levels in resting T cells (CD4(+) or CD8(+)) than in B cells (CD19(+)) or monocytes (CD14(+)) and was significantly down-regulated through immune responses. CONCLUSION: Our results provide evidence of the involvement of PRKCH as a susceptibility gene for RA in the Japanese population. Dysregulation of PKCeta signal transduction pathway(s) may confer increased risk of RA through aberrant T cell-mediated autoimmune responses.
Author : Takata Y,Hamada D,Miyatake K,Nakano S,Shinomiya F,Scafe CR,Reeve VM,Osabe D,Moritani M,Kunika K,Kamatani N,Inoue H,Yasui N,Itakura M,
Source : Arthritis Rheum. 2007 Jan;56(1):30-42.
42 records 2/2 page Prev   1  2
No.Polymorphism nameGene SymbolEntrez Gene ID
31 rs2296274 PRKCH 5583
32 rs2230500 PRKCH 5583
33 rs2230501 PRKCH 5583
34 rs912616 PRKCH 5583
35 rs912618 PRKCH 5583
36 rs959728 PRKCH 5583
37 rs3783789 PRKCH 5583
38 rs3783786 PRKCH 5583
39 rs2181985 PRKCH 5583
40 rs4902064 PRKCH 5583
41 rs12147132 PRKCH 5583
42 rs1088680 PRKCH 5583
42 records 2/2 page Prev   1  2
CopyRight © Group of Statistical Genetics, College of Bioinformatics Science and Technology, Harbin Medical University, China