All polymorphisms studied in this paper [PMID: 17804842] , total : 63 polymorphisms

Title : STAT4 and the risk of rheumatoid arthritis and systemic lupus erythematosus.
Abstract : BACKGROUND: Rheumatoid arthritis is a chronic inflammatory disease with a substantial genetic component. Susceptibility to disease has been linked with a region on chromosome 2q. METHODS: We tested single-nucleotide polymorphisms (SNPs) in and around 13 candidate genes within the previously linked chromosome 2q region for association with rheumatoid arthritis. We then performed fine mapping of the STAT1-STAT4 region in a total of 1620 case patients with established rheumatoid arthritis and 2635 controls, all from North America. Implicated SNPs were further tested in an independent case-control series of 1529 patients with early rheumatoid arthritis and 881 controls, all from Sweden, and in a total of 1039 case patients and 1248 controls from three series of patients with systemic lupus erythematosus. RESULTS: A SNP haplotype in the third intron of STAT4 was associated with susceptibility to both rheumatoid arthritis and systemic lupus erythematosus. The minor alleles of the haplotype-defining SNPs were present in 27% of chromosomes of patients with established rheumatoid arthritis, as compared with 22% of those of controls (for the SNP rs7574865, P=2.81x10(-7); odds ratio for having the risk allele in chromosomes of patients vs. those of controls, 1.32). The association was replicated in Swedish patients with recent-onset rheumatoid arthritis (P=0.02) and matched controls. The haplotype marked by rs7574865 was strongly associated with lupus, being present on 31% of chromosomes of case patients and 22% of those of controls (P=1.87x10(-9); odds ratio for having the risk allele in chromosomes of patients vs. those of controls, 1.55). Homozygosity of the risk allele, as compared with absence of the allele, was associated with a more than doubled risk for lupus and a 60% increased risk for rheumatoid arthritis. CONCLUSIONS: A haplotype of STAT4 is associated with increased risk for both rheumatoid arthritis and systemic lupus erythematosus, suggesting a shared pathway for these illnesses.
Author : Remmers EF,Plenge RM,Lee AT,Graham RR,Hom G,Behrens TW,de Bakker PI,Le JM,Lee HS,Batliwalla F,Li W,Masters SL,Booty MG,Carulli JP,Padyukov L,Alfredsson L,Klareskog L,Chen WV,Amos CI,Criswell LA,Seldin MF,Kastner DL,Gregersen PK,
Source : N Engl J Med. 2007 Sep 6;357(10):977-86.
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No.Polymorphism nameGene SymbolEntrez Gene ID
31 rs11889341 STAT4 6775
32 rs13010752 STAT4 6775
33 rs12998748 STAT4 6775
34 rs6434435 STAT4 6775
35 rs10931481 STAT4 6775
36 rs13011805 STAT4 6775
37 rs7574865 STAT4 6775
38 rs8179673 STAT4 6775
39 rs10181656 STAT4 6775
40 rs13401064 STAT4 6775
41 rs16833260 STAT4 6775
42 rs6752770 STAT4 6775
43 rs7599504 STAT4 6775
44 rs4341966 STAT4 6775
45 rs17769459 STAT4 6775
46 rs2356350 STAT4 6775
47 rs11685878 STAT4 6775
48 rs4853546 STAT4 6775
49 rs1031509 STAT4 6775
50 rs12327969 STAT4 6775
51 rs10497711 STAT4 6775
52 rs7572482 STAT4 6775
53 rs2278940 STAT4 6775
54 rs897200 STAT4 6775
55 rs16833437 STAT4 6775
56 rs1031507 STAT4 6775
57 rs13001658 STAT4 6775
58 rs1869624 STAT4 6775
59 rs4853550 STAT4 6775
60 rs4853551 STAT4 6775
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