All polymorphisms studied in this paper [PMID: 10674968] , total : 67 polymorphisms

Title : DQCAR 113 and DQCAR 115 in combination with HLA-DRB1 alleles are significant markers of susceptibility to rheumatoid arthritis in the Korean population.
Abstract : We have investigated HLA region microsatellite polymorphisms in rheumatoid arthritis (RA) which are known to be associated with HLA class II alleles in the Korean population. Ninety patients with RA and 106 controls were employed for this study, in which TAP1CA, DQCAR, D6S273, HLA-DRB1, -DQA1 and -DQB1 allele typing were performed. DQCAR 113 (RR = 3.2, P<0.0002), DQCAR 115 (RR = 3.6, P<0.0001) and heterozygous DQCAR 113/115 (RR = 11.2, P<0.0001) frequencies were significantly increased in the RA group compared with the control group. The HLA-DRB1 genotypes of patients who had DQCAR 113/115 alleles were defined as DRB1*04 and/or DRB1*09. There was no significant difference between RA and controls in D6S273 and TAP1CA allele frequencies. We demonstrated that HLA-DRB1*0405 (RR = 6.6, P<10(-6)), DQA1*03 (RR = 5.2, P<10(-6)), DQB1*04 (RR = 3.5, P<0.002) alleles were useful markers of susceptibility to RA in Koreans. The frequency of HLA-DRB1*0405 was higher in DQCAR 113 allele-positive RA (68.1%) than in DQCAR 113 allele-negative (16.3%) and total RA (43.3%) groups, and the susceptibility risk of DQCAR 113 allele to RA was more increased in the DRB1*0405-positive group (RR = 5.5, P<0.04). On the other hand, DQCAR 115 allele was more significantly associated with susceptibility to RA in HLA-DRB1*0405-negative patients (RR = 5.1, P<0.0005), and the association between RA and HLA-DRB1*0405 was also significantly associated with DQCAR 115 allele-negative patients (RR = 13.2, P<0.00001) as compared with DQCAR 115 allele-negative control groups. HLA-DRB1*0405-DQA1*03-DQCAR113-DQB1*03 haplotype showed high relative risk value (RR= 17.7, P<0.0002). In conclusion, the DQCAR allele in combination with HLA class II, especially DR, is probably a useful risk marker for RA susceptibility in the Korean population.
Author : Kim TG,Choi HB,Park SH,Kim HY,Han H,
Source : Tissue Antigens. 1999 Dec;54(6):552-9.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 NA D6S273 NA
2 NA D6S273 NA
3 NA D6S273 NA
4 NA D6S273 NA
5 NA D6S273 NA
6 NA D6S273 NA
7 NA D6S273 NA
8 NA D6S273 NA
9 NA D6S273 NA
10 NA D6S273 NA
11 NA D6S273 NA
12 NA TAP1 6890
13 NA TAP1 6890
14 NA TAP1 6890
15 NA TAP1 6890
16 NA TAP1 6890
17 NA TAP1 6890
18 NA DQCAR NA
19 NA DQCAR NA
20 NA DQCAR NA
21 NA DQCAR NA
22 NA DQCAR NA
23 NA DQCAR NA
24 NA DQCAR NA
25 NA DQCAR NA
26 NA DQCAR NA
27 NA DQCAR NA
28 NA DQCAR NA
29 NA DQCAR NA
30 NA DQCAR NA
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