All polymorphisms studied in this paper [PMID: 17195206] , total : 42 polymorphisms

Title : Genetic association between the PRKCH gene encoding protein kinase Ceta isozyme and rheumatoid arthritis in the Japanese population.
Abstract : OBJECTIVE: Analyses of families with rheumatoid arthritis (RA) have suggested the presence of a putative susceptibility locus on chromosome 14q21-23. This large population-based genetic association study was undertaken to examine this region. METHODS: A 2-stage case-control association study of 950 unrelated Japanese patients with RA and 950 healthy controls was performed using >400 gene-based common single-nucleotide polymorphisms (SNPs). RESULTS: Multiple SNPs in the PRKCH gene encoding the eta isozyme of protein kinase C (PKCeta) showed significant single-locus disease associations, the most significant being SNP c.427+8134C>T (odds ratio 0.72, 95% confidence interval 0.62-0.83, P = 5.9 x 10(-5)). Each RA-associated SNP was consistently mapped to 3 distinct regions of strong linkage disequilibrium (i.e., linkage disequilibrium or haplotype blocks) in the PRKCH gene locus, suggesting that multiple causal variants influence disease susceptibility. Significant SNPs included a novel common missense polymorphism of the PRKCH gene, V374I (rs2230500), which lies within the ATP-binding site that is highly conserved among PKC superfamily members. In circulating lymphocytes, PRKCH messenger RNA was expressed at higher levels in resting T cells (CD4(+) or CD8(+)) than in B cells (CD19(+)) or monocytes (CD14(+)) and was significantly down-regulated through immune responses. CONCLUSION: Our results provide evidence of the involvement of PRKCH as a susceptibility gene for RA in the Japanese population. Dysregulation of PKCeta signal transduction pathway(s) may confer increased risk of RA through aberrant T cell-mediated autoimmune responses.
Author : Takata Y,Hamada D,Miyatake K,Nakano S,Shinomiya F,Scafe CR,Reeve VM,Osabe D,Moritani M,Kunika K,Kamatani N,Inoue H,Yasui N,Itakura M,
Source : Arthritis Rheum. 2007 Jan;56(1):30-42.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs11622327 PRKCH 5583
2 rs1951964 PRKCH 5583
3 rs2230499 PRKCH 5583
4 rs1957907 PRKCH 5583
5 NA PRKCH 5583
6 rs1957910 PRKCH 5583
7 NA PRKCH 5583
8 rs912620 PRKCH 5583
9 rs12887002 PRKCH 5583
10 rs12147491 PRKCH 5583
11 rs7142290 PRKCH 5583
12 rs7141535 PRKCH 5583
13 rs1547148 PRKCH 5583
14 rs7141628 PRKCH 5583
15 rs7160675 PRKCH 5583
16 rs7140526 PRKCH 5583
17 rs2352084 PRKCH 5583
18 rs767757 PRKCH 5583
19 rs767755 PRKCH 5583
20 rs7145570 PRKCH 5583
21 NA PRKCH 5583
22 rs10149839 PRKCH 5583
23 rs2882830 PRKCH 5583
24 rs4902055 PRKCH 5583
25 NA PRKCH 5583
26 rs912621 PRKCH 5583
27 rs2209386 PRKCH 5583
28 rs11848272 PRKCH 5583
29 rs12435952 PRKCH 5583
30 rs2296273 PRKCH 5583
42 records 1/2 page Next  1  2 
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