All polymorphisms studied in this paper [PMID: 17665455] , total : 34 polymorphisms

Title : Association of arthritis with a gene complex encoding C-type lectin-like receptors.
Abstract : OBJECTIVE: To identify susceptibility genes in a rat model of rheumatoid arthritis (RA) and to determine whether the corresponding human genes are associated with RA. METHODS: Genes influencing oil-induced arthritis (OIA) were position mapped by comparing the susceptibility of inbred DA rats with that of DA rats carrying alleles derived from the arthritis-resistant PVG strain in chromosomal fragments overlapping the quantitative trait locus Oia2. Sequencing of gene complementary DNA (cDNA) and analysis of gene messenger RNA (mRNA) expression were performed to attempt to clone a causal gene. Associations with human RA were evaluated by genotyping single-nucleotide polymorphisms (SNPs) in the corresponding human genes and by analyzing frequencies of alleles and haplotypes in RA patients and age-, sex-, and area-matched healthy control subjects. RESULTS: Congenic DA rats were resistant to OIA when they carried PVG alleles for the antigen-presenting lectin-like receptor gene complex (APLEC), which encodes immunoregulatory C-type lectin-like receptors. Multiple differences in cDNA sequence and mRNA expression precluded cloning of a single causal gene. Five corresponding human APLEC genes were identified and targeted. The SNP rs1133104 in the dendritic cell immunoreceptor gene (DCIR), and a haplotype including that marker and 4 other SNPs in DCIR and its vicinity showed an indication of allelic association with susceptibility to RA in patients who were negative for antibodies to cyclic citrullinated peptide (anti-CCP), with respective odds ratios of 1.27 (95% confidence interval [95% CI] 1.06-1.52; uncorrected P = 0.0073) and 1.37 (95% CI 1.12-1.67; uncorrected P = 0.0019). Results of permutation testing supported this association of the haplotype with RA. CONCLUSION: Rat APLEC is associated with susceptibility to polyarthritis, and human APLEC and DCIR may be associated with susceptibility to anti-CCP-negative RA.
Author : Lorentzen JC,Flornes L,Eklow C,Backdahl L,Ribbhammar U,Guo JP,Smolnikova M,Dissen E,Seddighzadeh M,Brookes AJ,Alfredsson L,Klareskog L,Padyukov L,Fossum S,
Source : Arthritis Rheum. 2007 Aug;56(8):2620-32.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs6488608 CLEC4C 170482
2 rs6488610 CLEC4C 170482
3 rs7134202 CLEC4C 170482
4 rs2192136 NECAP1 25977
5 rs2889626 NECAP1 25977
6 rs1062836 NECAP1 25977
7 rs7305412 NA NA
8 rs2889629 NA NA
9 rs2024304 NA NA
10 rs2110067 NA NA
11 rs1035060 NA NA
12 rs4882913 CLEC4A 50856
13 rs2024301 CLEC4A 50856
14 rs2377422 CLEC4A 50856
15 rs11043498 CLEC4A 50856
16 rs4322490 CLEC4A 50856
17 rs4573763 CLEC4A 50856
18 rs7302963 CLEC4A 50856
19 rs1133104 CLEC4A 50856
20 rs10840759 CLEC4A 50856
21 rs4589367 NA NA
22 rs4604965 NA NA
23 rs7307734 NA NA
24 rs6486850 NA NA
25 rs6486851 NA NA
26 rs10840926 ZNF705A 440077
27 NA DECTIN2 NA
28 NA DECTIN2 NA
29 NA DECTIN2 NA
30 rs4534636 CLEC4D 338339
34 records 1/2 page Next  1  2 
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