All polymorphisms studied in this paper [PMID: 17932559] , total : 52 polymorphisms

Title : Association of STAT4 with rheumatoid arthritis in the Korean population.
Abstract : A recent study in the North American White population has documented the association of a common STAT4 haplotype (tagged by rs7574865) with risk for rheumatoid arthritis (RA) and systemic lupus erythematosus. To replicate this finding in the Korean population, we performed a case-control association study. We genotyped 67 single nucleotide polymorphisms (SNPs) within the STAT1 and STAT4 regions in 1123 Korean patients with RA and 1008 ethnicity-matched controls. The most significant four risk SNPs (rs11889341, rs7574865, rs8179673, and rs10181656 located within the third intron of STAT4) among 67 SNPs are identical with those in the North American study. All four SNPs have modest risk for RA susceptibility (odds ratio 1.21-1.27). A common haplotype defined by these markers (TTCG) carries significant risk for RA in Koreans [34 percent versus 28 percent, P=0.0027, OR (95 percent CI)=1.33 (1.10-1.60)]. By logistic regression analysis, this haplotype is an independent risk factor in addition to the classical shared epitope alleles at the HLA-DRB1 locus. There were no significant associations with age of disease onset, radiographic progression, or serologic status using either allelic or haplotypic analysis. Unlike several other risk genes for RA such as PTPN22, PADI4, and FCRL3, a haplotype of the STAT4 gene shows consistent association with RA susceptibility across Whites and Asians, suggesting that this risk haplotype predates the divergence of the major racial groups.
Author : Lee HS,Remmers EF,Le JM,Kastner DL,Bae SC,Gregersen PK,
Source : Mol Med. 2007 Sep-Oct;13(9-10):455-60.
52 records 1/2 page Next  1  2 
No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs3088307 GLS 2744
2 rs16824035 STAT1 6772
3 rs6718902 STAT1 6772
4 rs13395505 STAT1 6772
5 rs1547550 STAT1 6772
6 rs2280234 STAT1 6772
7 rs2280233 STAT1 6772
8 rs2280232 STAT1 6772
9 rs11887698 STAT1 6772
10 rs10199181 STAT1 6772
11 rs13029532 STAT1 6772
12 rs10208033 STAT1 6772
13 rs1467199 STAT1 6772
14 rs16833177 NA NA
15 rs3024918 NA NA
16 rs3024904 STAT4 6775
17 rs3024936 STAT4 6775
18 rs925847 STAT4 6775
19 rs6749371 STAT4 6775
20 rs6715106 STAT4 6775
21 rs16833215 STAT4 6775
22 rs3024866 STAT4 6775
23 rs1517352 STAT4 6775
24 rs13017460 STAT4 6775
25 rs7601754 STAT4 6775
26 rs6434435 STAT4 6775
27 rs13401064 STAT4 6775
28 rs16833260 STAT4 6775
29 rs6752770 STAT4 6775
30 rs4341966 STAT4 6775
52 records 1/2 page Next  1  2 
CopyRight © Group of Statistical Genetics, College of Bioinformatics Science and Technology, Harbin Medical University, China