All polymorphisms studied in this paper [PMID: 18576312] , total : 31 polymorphisms

Title : A broad analysis of IL1 polymorphism and rheumatoid arthritis.
Abstract : OBJECTIVE: It has been suggested that polymorphisms in IL1 are correlated with severe and/or erosive rheumatoid arthritis (RA), but the implicated alleles have differed among studies. The aim of this study was to perform a broad and well-powered search for association between allelic polymorphism in IL1A and IL1B and the susceptibility to or severity of RA. METHODS: Key coding and regulatory regions in IL1A and IL1B were sequenced in 24 patients with RA, revealing 4 novel single-nucleotide polymorphisms (SNPs) in IL1B. These and a comprehensive set of 24 SNPs tagging most of the underlying genetic diversity were genotyped in 3 independent RA case-control sample sets and 1 longitudinal RA cohort, totaling 3,561 patients and 3,062 control subjects. RESULTS: No fully significant associations were observed. Analysis of the discovery case-control sample sets indicated a potential association of IL1B promoter region SNPs with susceptibility to RA (for RA3/A, odds ratio [OR] 1.27, P = 0.0021) or with the incidence of radiographic erosions (for RA4/C, OR 1.56, P = 0.036), but these findings were not replicated in independent case-control samples. No association with rheumatoid factor, anti-cyclic citrullinated peptide, or the Disease Activity Score in 28 joints was found. None of the associations previously observed in other studies were replicated here. CONCLUSION: In spite of a broad and highly powered study, we observed no robust, reproducible association between IL1A/B variants and the susceptibility to or severity of RA in white individuals of European descent. Our results provide evidence that, in the majority of cases, polymorphism in IL1A and IL1B is not a major contributor to genetic susceptibility to RA.
Author : Johnsen AK,Plenge RM,Butty V,Campbell C,Dieguez-Gonzalez R,Gomez-Reino JJ,Shadick N,Weinblatt M,Gonzalez A,Gregersen PK,Benoist C,Mathis D,
Source : Arthritis Rheum. 2008 Jul;58(7):1947-57. doi: 10.1002/art.23592.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs6712572 CKAP2L 150468
2 rs1304037 IL1A 3552
3 rs3783550 IL1A 3552
4 rs17561 IL1A 3552
5 rs2856841 IL1A 3552
6 rs3783531 IL1A 3552
7 rs1609682 IL1A 3552
8 rs2856837 IL1A 3552
9 rs1800587 IL1A 3552
10 rs6746923 NA NA
11 rs17597976 NA NA
12 rs11687624 NA NA
13 rs4849125 NA NA
14 rs1143642 IL1B 3553
15 rs1143634 IL1B 3553
16 rs1143633 IL1B 3553
17 NA IL1B 3553
18 rs1143627 IL1B 3553
19 rs16944 IL1B 3553
20 NA IL1B 3553
21 NA IL1B 3553
22 rs13013349 NA NA
23 rs13032029 NA NA
24 NA IL1B 3553
25 rs4447608 NA NA
26 rs6735739 NA NA
27 rs6745746 NA NA
28 rs12053091 NA NA
29 rs6716572 ABCG5 64240
30 rs1894399 IL1A 3552
31 records 1/2 page Next  1  2 
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