All polymorphisms studied in this paper [PMID: 20300049] , total : 33 polymorphisms

Title : Polymorphisms spanning the TNFR2 and TACE genes do not contribute towards variable anti-TNF treatment response.
Abstract : The introduction of tumour necrosis factor antagonists (anti-TNF) has greatly improved the treatment of rheumatoid arthritis, however, a significant proportion of patients fail to respond to therapy. We hypothesized that variants spanning the type 2 TNF receptor (TNFR2) and the TNF cleavage enzyme (TACE) genes contribute towards the observed variation in patient response (defined as the absolute change in 28-joint count disease activity score). Twenty-nine single nucleotide polymorphisms (SNPs) were genotyped in a large cohort of patients (n=602) and analysed by multivariate linear regression. Three SNPs (rs520916, rs652625, rs597519) mapping upstream of TNFR2 showed borderline evidence for association (P<0.1) across the complete cohort and, more so, in the etanercept-treated subgroup. However, the evidence of association was neither replicated in an independent cohort (n=377) nor strengthened after combined analysis (n=979). We conclude that common SNPs spanning the TNFR2 and TNF cleavage enzyme (TACE) genes do not have a major effect on the response to anti-TNF therapy in rheumatoid arthritis patients.
Author : Potter C,Gibbons LJ,Bowes JD,Cordell HJ,Hyrich K,Isaacs JD,Morgan AW,Wilson AG,Barton A,
Source : Pharmacogenet Genomics. 2010 May;20(5):338-41. doi: 10.1097/FPC.0b013e32833878d7.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs10929585 IAH1 285148
2 rs12473402 ADAM17 6868
3 rs12475630 ADAM17 6868
4 rs4499396 ADAM17 6868
5 rs17590882 ADAM17 6868
6 rs5027446 ADAM17 6868
7 rs10179642 ADAM17 6868
8 rs6432017 ADAM17 6868
9 rs12474540 ADAM17 6868
10 rs10929589 NA NA
11 rs1148459 NA NA
12 rs816060 NA NA
13 rs520916 TNFRSF1B 7133
14 rs652625 TNFRSF1B 7133
15 rs496888 TNFRSF1B 7133
16 rs597519 TNFRSF1B 7133
17 rs5745984 TNFRSF1B 7133
18 rs3766730 TNFRSF1B 7133
19 rs816050 TNFRSF1B 7133
20 rs17037696 TNFRSF1B 7133
21 rs474247 TNFRSF1B 7133
22 rs1201157 TNFRSF1B 7133
23 rs5746014 TNFRSF1B 7133
24 rs5746016 TNFRSF1B 7133
25 rs666078 TNFRSF1B 7133
26 rs653667 TNFRSF1B 7133
27 rs1061622 TNFRSF1B 7133
28 rs636964 TNFRSF1B 7133
29 rs5746051 TNFRSF1B 7133
30 rs235219 TNFRSF1B 7133
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