All polymorphisms studied in this paper [PMID: 20309874] , total : 31 polymorphisms

Title : Rheumatoid arthritis risk allele PTPRC is also associated with response to anti-tumor necrosis factor alpha therapy.
Abstract : OBJECTIVE: Anti-tumor necrosis factor alpha (anti-TNF) therapy is a mainstay of treatment in rheumatoid arthritis (RA). The aim of the present study was to test established RA genetic risk factors to determine whether the same alleles also influence the response to anti-TNF therapy. METHODS: A total of 1,283 RA patients receiving etanercept, infliximab, or adalimumab therapy were studied from among an international collaborative consortium of 9 different RA cohorts. The primary end point compared RA patients with a good treatment response according to the European League Against Rheumatism (EULAR) response criteria (n = 505) with RA patients considered to be nonresponders (n = 316). The secondary end point was the change from baseline in the level of disease activity according to the Disease Activity Score in 28 joints (triangle upDAS28). Clinical factors such as age, sex, and concomitant medications were tested as possible correlates of treatment response. Thirty-one single-nucleotide polymorphisms (SNPs) associated with the risk of RA were genotyped and tested for any association with treatment response, using univariate and multivariate logistic regression models. RESULTS: Of the 31 RA-associated risk alleles, a SNP at the PTPRC (also known as CD45) gene locus (rs10919563) was associated with the primary end point, a EULAR good response versus no response (odds ratio [OR] 0.55, P = 0.0001 in the multivariate model). Similar results were obtained using the secondary end point, the triangle upDAS28 (P = 0.0002). There was suggestive evidence of a stronger association in autoantibody-positive patients with RA (OR 0.55, 95% confidence interval [95% CI] 0.39-0.76) as compared with autoantibody-negative patients (OR 0.90, 95% CI 0.41-1.99). CONCLUSION: Statistically significant associations were observed between the response to anti-TNF therapy and an RA risk allele at the PTPRC gene locus. Additional studies will be required to replicate this finding in additional patient collections.
Author : Cui J,Saevarsdottir S,Thomson B,Padyukov L,van der Helm-van Mil AH,Nititham J,Hughes LB,de Vries N,Raychaudhuri S,Alfredsson L,Askling J,Wedren S,Ding B,Guiducci C,Wolbink GJ,Crusius JB,van der Horst-Bruinsma IE,Herenius M,Weinblatt ME,Shadick NA,Worthington J,Batliwalla F,Kern M,Morgan AW,Wilson AG,Isaacs JD,Hyrich K,Seldin MF,Moreland LW,Behrens TW,Allaart CF,Criswell LA,Huizinga TW,Tak PP,Bridges SL Jr,Toes RE,Barton A,Klareskog L,Gregersen PK,Karlson EW,Plenge RM,
Source : Arthritis Rheum. 2010 Jul;62(7):1849-61. doi: 10.1002/art.27457.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs10919563 PTPRC 5788
2 rs11586238 NA NA
3 rs4535211 PLCL2 23228
4 rs11761231 NA NA
5 rs1341239 PRL 5617
6 rs540386 TRAF6 7189
7 rs2104286 IL2RA 3559
8 rs6920220 NA NA
9 rs4895501 NA NA
10 rs2476601 PTPN22 26191
11 rs3890745 MMEL1 79258
12 rs548234 NA NA
13 rs2812378 CCL21 6366
14 rs13031237 REL 5966
15 rs4810485 CD40 958
16 rs4750316 DKFZp667F0711 399716
17 rs3087243 CTLA4 1493
18 rs4947332 SLC44A4 80736
19 rs231707 FAM193A 8603
20 rs3761847 TRAF1 7185
21 rs6457617 NA NA
22 rs1980421 NA NA
23 rs6822844 NA NA
24 rs13277113 BLK 640
25 rs3817964 BTNL2 56244
26 rs3218253 IL2RB 3560
27 rs394581 NA NA
28 rs2621377 NA NA
29 rs13207033 NA NA
30 rs42041 CDK6 1021
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