All polymorphisms studied in this paper [PMID: 21248776] , total : 31 polymorphisms

Title : CIITA is not associated with risk of developing rheumatoid arthritis.
Abstract : The major histocompatibility complex (MHC) class II transactivator gene (CIITA) encodes an important transcription factor regulating genes required for human leukocyte antigen (HLA) class II MHC-restricted antigen presentation. MHC genes, particularly HLA class II, are strongly associated with risk of developing rheumatoid arthritis (RA). Given the strong biological relationship between CIITA and HLA class II genes, a comprehensive investigation of CIITA variation in RA was conducted. This study tested 31 CIITA single-nucleotide polymorphisms in 2542 RA cases and 3690 controls (N=6232). All individuals were of European ancestry, as determined by ancestry informative genetic markers. No evidence for association between CIITA variation and RA was observed after a correction for multiple testing was applied. This is the largest study to fully characterize common genetic variation in CIITA, including an assessment of haplotypes. Results exclude even a modest role for common CIITA polymorphisms in susceptibility to RA.
Author : Bronson PG,Ramsay PP,Seldin MF,Gregersen PK,Criswell LA,Barcellos LF,
Source : Genes Immun. 2011 Apr;12(3):235-8. doi: 10.1038/gene.2010.67. Epub 2011 Jan 20.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 rs12928665 CIITA 4261
2 rs12932187 CIITA 4261
3 rs4781011 CIITA 4261
4 rs11074934 CIITA 4261
5 rs8043545 CIITA 4261
6 rs8063850 CIITA 4261
7 rs6498119 CIITA 4261
8 rs4781015 CIITA 4261
9 rs8048002 CIITA 4261
10 rs7189406 CIITA 4261
11 rs6498124 CIITA 4261
12 rs4781016 CIITA 4261
13 rs4774 CIITA 4261
14 rs4781018 CIITA 4261
15 rs4780334 CIITA 4261
16 rs4781019 CIITA 4261
17 rs4780335 CIITA 4261
18 rs6498126 CIITA 4261
19 rs7204799 CIITA 4261
20 rs12598246 CIITA 4261
21 rs11074938 CIITA 4261
22 rs4781020 CIITA 4261
23 rs6498130 CIITA 4261
24 rs6498132 CIITA 4261
25 rs11074939 CIITA 4261
26 rs9788916 CIITA 4261
27 rs7404786 CIITA 4261
28 rs8056269 CIITA 4261
29 rs2229322 CIITA 4261
30 rs4781024 CIITA 4261
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