All polymorphisms studied in this paper [PMID: 23696630] , total : 32 polymorphisms

Title : A genetic variant in the region of MMP-9 is associated with serum levels and progression of joint damage in rheumatoid arthritis.
Abstract : OBJECTIVES: The severity of joint destruction is highly variable between rheumatoid arthritis (RA) patients. The majority of its heritability is still unexplained. Several autoimmune diseases share genetic risk variants that may also influence disease progression. We aimed to identify genetic risk factors for the severity of joint damage in RA by studying genetic susceptibility loci of several autoimmune diseases. METHODS: In phase 1, 3143 sets of x-rays of 646 Dutch RA patients taken over 7 years (Sharp van der Heijde (SHS) scored) were studied. Genotyping was done by Immunochip. Associations of single-nucleotide polymorphisms (SNPs) with minor allele frequency (MAF) >0.01 and joint destruction were analysed. In phase 2, 686 North American RA patients with 926 SHS-scored x-rays over 15 years of follow-up were evaluated. In both phases multiple testing corrections were done for the number of uncorrelated SNPs; the thresholds for significance were p<1.1x10(-6) and p<0.0036. Matrix metalloproteinase 9 (MMP-9) levels were measured with ELISA in baseline serum samples. RESULTS: In phase 1, 109 SNPs associated significantly with joint destruction (p<1.1x10(-6)). Of these, 76 were located in the HLA region; the 33 non-HLA variants were studied in phase 2. Here two variants were associated with the severity of joint destruction: rs451066 on chromosome 14 (p=0.002, MAF=0.20) and rs11908352 on chromosome 20 (p=0.002, MAF=0.21). Rs11908352 is located near the gene encoding MMP-9. Serum levels of MMP-9 were significantly associated with the rs11908352 genotypes (p=0.007). CONCLUSIONS: These data indicate that two loci that confer risk to other autoimmune diseases also affect the severity of joint destruction in RA. Rs11908352 may influence joint destruction via MMP-9 production.
Author : de Rooy DP,Zhernakova A,Tsonaka R,Willemze A,Kurreeman BA,Trynka G,van Toorn L,Toes RE,Huizinga TW,Houwing-Duistermaat JJ,Gregersen PK,van der Helm-van Mil AH,
Source : Ann Rheum Dis. 2014 Jun 1;73(6):1163-9. doi: 10.1136/annrheumdis-2013-203375. Epub 2013 May 21.
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No.Polymorphism nameGene SymbolEntrez Gene ID
1 NA KG NA
2 rs4567998 LOC100506047 100506047
3 rs4575770 LOC100506047 100506047
4 rs6709667 LOC100506047 100506047
5 rs4952660 NA NA
6 rs11306948 NA NA
7 rs4241188 HECW2 57520
8 rs6550923 LOC101927874 101927874
9 rs6872021 NSD1 64324
10 rs7724098 NSD1 64324
11 rs4976688 RGS14 10636
12 rs4075958 RGS14 10636
13 rs4976646 RGS14 10636
14 rs11746443 RGS14 10636
15 rs348472 ALDH1A1 216
16 rs2038621 NA NA
17 rs732726 NA NA
18 rs780849 CUBN 8029
19 rs1938525 ANK3 288
20 rs10898200 NADSYN1 55191
21 rs1565190 ITPR2 3709
22 rs10783780 CNPY2 10330
23 rs12422499 STAT2 6773
24 rs7305258 LINC01234 100506465
25 rs9590793 NA NA
26 rs451066 NA NA
27 rs189866 NA NA
28 rs57418859 NA NA
29 rs206514 LINC01254 101927350
30 rs8102662 LILRA4 23547
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